I used 1-1/4" OD stainless tubing for my headpipe, but installed an integral torque cones in the flanges roughly equal to the stock ID (.875). then at the collector, I went to 1.75 OD, then to a werkes exhaust can. (which has a reverse cone shaped perf tube inside.) I was amazed at the difference to the pipe i had before which was a roached out stock header with a mechanical baffle. Note that i have an open air box and foam Uni filter. this thing pull hard now. may people think that 1-1/4" head pipe is too big for a stock bike but the torque cones seem to make up for that and it does still have nice top end.
I got all of my material from cone engineering, (180's, straight pipe and collector) but making it this way was a lot more work than i thought. (every change in direction requires two welds and a pie section) next time I'll use a tubing bender.